Plant MITE

SE2330030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1149
Musa acuminata
SE2330030
hAT
Hat5
chrUn_random:98846077-98846278
ATTTAACA
TTAACACAAGGTT

Secondary structure and sequence

TSD TIR

5'

3'

AT    CA  A    CTGAC               G GTACCAATCAACTGTCAATA          -  AGCTATACCGAACATACCAACACACGGTACACTAAGG
  TTAA  CA GGTT     TACCATACCATACCG T                    CGATATGTAC CG                                     
  ||||  || ||||     ||||||||||||||| |                    |||||||||| ||                                      
  AATT  GT CCAA     ATGGTATGGTATGGC A                    GCTATACATG TC                                     
AC    TG  A    ACGTT               G -----------ACCATCCCC          A  AGACTATCTCCTGGCCATACCCATCATATATCCATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330030

ATTTAACACAAGGTTCTGACTACCATACCATACCGGTGTACCAATCAACTGTCAATACGATATGTACCGAGCTATACCGAACATACCAACACACGGTACACTAAGGTGTACCTATATACTACCCATACCGGTCCTCTATCAGACTAGTACATATCGCCCCTACCAAGCGGTATGGTATGGTATTGCAAACCATGGTTTAACA

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