SE2330038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1157
  • Musa acuminata
  • SE2330038
  • hAT
  • Hat1
  • chr3:5753932-5754158
  • ATTTGAAG
  • TTTGAAGCAAGGTTCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
A      G  A    C  --A       -    -       --  TT   TCTGGGCTCGGTACCGGTACGGTACGGTATACCGAGCGGTACATCCAGGTGTACCGAGTACTGTAGC
 TTTGAA CA GGTT GC   ATACCGT ACCG TACCGGT  AT  CGA                                                                   
 |||||| || |||| ||   ||||||| |||| |||||||  ||  |||                                                                   A
 AAGTTT GT CCAG CG   TGGCTCG CATG TGGGCCA  CA  TGG                                                                   
G      A  C    A  GCA       G    G       TA  --   CCAGGCTGTCCAACAGCCATGCGCCTGGCTGACAATGGCCAGGCTCACGTGACATCGTGACATCGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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