Plant MITE

SE2330040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1159
Musa acuminata
SE2330040
hAT
Hat2
chr1:2739025-2739221
GATTTATG
T

Secondary structure and sequence

TSD TIR

5'

3'

   GATT   -  AAGGT   CA   -     ----        ATATTTCGACCTGGGCTCGGTACCGGTATGGTGTACCGAGCACTGTAGCACTGCTACAGTGC
       TAT GC     TCG  ATA CCGTA    CCGTACCG                                                              
       ||| ||     |||  ||| |||||    ||||||||                                                               
       GGT AC     GAC  GGT TGGCT    ATGGCGGG                                                              
GTATTTA   C  ----A   --   A     TAGC        CCATACCCGCCATACATGGCCAGGCTGTCCGGTCGCCATGCGCCTGGCAGGCCATGGCCAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330040

GATTTATGCAAGGTTCGCAATACCGTACCGTACCGATATTTCGACCTGGGCTCGGTACCGGTATGGTGTACCGAGCACTGTAGCACTGCTACAGTGCGGACCGGTACCGGACGGTCCGCGTACCGCTGGCCTGTCGGACCGGTACATACCGCCCATACCGGGCGGTACGATTCGGTATGGCAGACACTGGATTTATG

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