SE2330042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1161
  • Musa acuminata
  • SE2330042
  • hAT
  • Hat4
  • chr6:1415551-1415863
  • GTTGTAAG
  • TTGTAAGCAAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
G      G      TC      -     --  ATA    C  TTCGACCCGGGCTCGATACGGTACGGTACCGGTGTACCGGGCGGTACATCAGGGTGTACCGAGCGGTACATCCTGGAGTACCGAACAATTTTATATTTTTTTTATACTGTAACAGTGTT
 TTGTAA CAAGGT  GCCGTA TCGTA  TC   CCGG GT                                                                                                                       
 |||||| ||||||  |||||| |||||  ||   |||| ||                                                                                                                        
 AATGTT GTTCCA  GACAGT TGGCT  GT   ATGG CG                                                                                                                       
G      A      --      A     TC  ---    -  AGCATGGCTCGCCATACATGGCCAGGCTGTCCAATGGTCATGCGCCTGGCGGGCCATGGCGATGTTACGATGTTATAAAAAATAACATCGTGATATTATCACGATGTCATGATATGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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