Plant MITE

SE2330043

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1162
Musa acuminata
SE2330043
hAT
Hat1
chr8:28947591-28947826
CCGCTCAG
GCAAGGTATGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

CCGCTCA   A          --   ---          GGTGTTTCGAGGTTGGCTCGGTATGGTACGGTACCGGCGTATCGAGCGGTACACTAGGGCGTACCGAGCTATTTCCTCTTA
       GCA GGTATGCAAT  ACC   GTACCGTATC                                                                                 
       ||| ||||||||||  |||   ||||||||||                                                                                 C
       CGT CCATACGTTA  GCT   CATGGCGGAC                                                                                 
GACTCAC   A          AA   TAC          TATGTCCGCCATGCATGGCCAAGCTGCCGTATGGCTATGCGCCTGGCGGGCGATGACTTGCCTAGCACGATGTCACGATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330043

CCGCTCAGCAAGGTATGCAATACCGTACCGTATCGGTGTTTCGAGGTTGGCTCGGTATGGTACGGTACCGGCGTATCGAGCGGTACACTAGGGCGTACCGAGCTATTTCCTCTTACTGTAGCACTGTAGCACGATCCGTTCAGTAGCGGGCGGTCCGCGTATCGGTATGCCGTCGAACCGGTACGTACCGCCTGTATCAGGCGGTACCATTCGAAATTGCATACCATGCCACTCAG

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