SE2330049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1168
  • Musa acuminata
  • SE2330049
  • hAT
  • Hat6
  • chr5:20670137-20670491
  • GTTGCTAG
  • GCTAGCAGGGTTTTGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTT  T G         G   -------      CCGTATCGACGTACCGAGCTCTACTCGGTATGGCGCGTACCGATATATATCATTGGTCATCTAGGACGTACCGATGGTACACCCTAAAACCTTAAAAATACCTTCACCTACCACGCCAGGGCATATCGATCGGTATGCCTCAATAAC
   GC A CAGGGTTTT AAT       ACCGGT                                                                                                                                                   
   || | ||||||||| |||       ||||||                                                                                                                                                    
   CG T GTCCCAAGA TTA       ACATGG                                                                                                                                                   
GAT  T G         G   AAGTTAC      CGAACCATGTCCACCATACATGGCCAGGCTCTCCTATGGCTATGCGTTTGGCAGGAGATGACCCATCATGGTCACAAAACTAGCCATGGCTCCACATGGCTGGCCATAGCGGGGCCTAAAACTGGTAATGACGAAACATAAAGCTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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