Plant MITE

SE2330050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1169
Musa acuminata
SE2330050
hAT
Hat7
chr3:7886060-7886261
CCTTTATT
AAGGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

CCTTTATTC     T  ACGTACTAAA    -    ---   G  A  ---  GA  ACATACCAATCCGATAGAGGACCGGTACAGATGATACATCTGTACACTGTAGTGT
         AAGGT TG          GCAT ACCG   CTC AT CG   GA  GT                                                       
         ||||| ||          |||| ||||   ||| || ||   ||  ||                                                        
         TTCCG AC          CGTA TGGC   GCA TG GT   AT  GG                                                       
     GTAT     T  ------CAAG    A    TAG   -  -  CAC  --  TTGGTCGACAGCCATACCATGCATGGCTCGACATGGCTCACATGACTGTATACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330050

CCTTTATTCAAGGTTTGACGTACTAAAGCATACCGCTCGATACGGAGAGTACATACCAATCCGATAGAGGACCGGTACAGATGATACATCTGTACACTGTAGTGTATCATATGTCAGTACACTCGGTACAGCTCGGTACGTACCATACCGACAGCTGGTTGGTACACTGGTACGGATCGGTAATGCGAACCATGCCTTTATG

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