SE2330053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1172
  • Musa acuminata
  • SE2330053
  • hAT
  • Hat2
  • chr6:5105270-5105468
  • CCGCTCGG
  • CCGCTCGGCAAGGTTCGCCGTACCGTACCATACCAGC

Secondary structure and sequence

TSD    TIR
5'



3'
   CT          C         T  CA    A  GT    A    G   C        TA   --  CGGTATACCGCTCGGTACACCCAGTACGGGCGGA
CCG  CGGCAAGGTT GCCGTACCG AC  TACC GC  TTCG CCCG GCT GGTACCGG  CGG  TA                                  
|||  |||||||||| ||||||||| ||  |||| ||  |||| |||| ||| ||||||||  |||  ||                                  C
GGC  GCCGTTCCAA CGGCATGGC TG  ATGG CG  GGCC ATGC CCG CCATGCAT  GGC  GG                                  
   TC          A         C  AC    -  --    -    -   -        --   CA  CTGTCCGATCGCCATGCGCCTGGTGGGACATGGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End