Plant MITE

SE2330056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1175
Musa acuminata
SE2330056
hAT
Hat1
chr8:26745500-26745756
ATTTAAGG
TTAAGGCAAGGTCTGCCATACCG

Secondary structure and sequence

TSD TIR

5'

3'

AT    GG      C   C      AATC          GTACGGGCGGTATGTACCGATCCGACAGGCCAGCGGTACGCGGACCACCCGGTACCGGTCCGCACTGTAGCAGTGCACTGTTATAGTAGTA
  TTAA  CAAGGT TGC ATACCG    GTACCGCCCG                                                                                           
  ||||  |||||| ||| ||||||    ||||||||||                                                                                           G
  AATT  GTTCCA GCG TATGGC    ATGGTATGGC                                                                                           
AG    TA      A   T      ----          CATAAAGCTGGACCCGAGCCATGGCCATGCTATGCCACATGGCTCGCCATGTGGCTCGTGACATCGTGACGATGTCATGACAACGTGACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330056

ATTTAAGGCAAGGTCTGCCATACCGAATCGTACCGCCCGGTACGGGCGGTATGTACCGATCCGACAGGCCAGCGGTACGCGGACCACCCGGTACCGGTCCGCACTGTAGCAGTGCACTGTTATAGTAGTAGTACAGTGCAACAGTACTGTAGCAGTGCTACAGTGCTCGGTGTACCGCTCGGTACACCGTATCGTACCGGTACCGAGCCCAGGTCGAAATACCGGTATGGTACGGTATTGCGAACCTTGATTTAAGA

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