SE2330061

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1180
  • Musa acuminata
  • SE2330061
  • hAT
  • Hat1
  • chr3:7254109-7254387
  • CTCTTGGT
  • TCTTGGTCAAGGTATGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
C  TT  T  A          -------               T   TCGCGGTTGGCTCGGTATGGTACGGTACCGTGTACCGCTCGGTACACCAGGGCGTATCGAGCAGTTTTAAATATTTCTTCCTCTTACTGTAGCACT
 TC  GG CA GGTATGCAAT       ACCGTACCGTACCGA GTT                                                                                                
 ||  || || ||||||||||       ||||||||||||||| |||                                                                                                G
 GG  CT GT CCATACGTTA       CCATGGCGAGCCATG TCC                                                                                                
T  TT  C  A          AAGCTTA               -   GCCATGCATGGCCAGGCTGCCGTATGGCTATGCGCCTGGCGGACGATGGCCTGCCTTGCACGATGTCACGATGTTACGATATGATATCATCTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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