SE2330063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1182
  • Musa acuminata
  • SE2330063
  • hAT
  • Hat4
  • chr7:27475805-27476070
  • CTAGATAC
  • CTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
        ATAC      C    A    GAA   TA   CC        TCCGACAGGTTACCGGTATACGGACCGCCTAGTACTGCTACAGTGCTACAGTATAGTGCTATACTATAGTGCTATAGTATGAAAAAGTATA
    CTAG    CAAGGT TGTC TACC   GCG  CCG  TGTACCGG                                                                                           
    ||||    |||||| |||| ||||   |||  |||  ||||||||                                                                                           A
    GATC    GTTCCA GCGG ATGG   TAT  GGT  ATGGCTGC                                                                                           
CATA    ----      A    C    ---   --   --        AAAGCTGAGCCCGAGCCATACCATGACATGACCACATGGCCCACCATGTAGTCCCGTATGACTCGCCATGTGGGACCACATGGCTTGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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