Plant MITE

SE2330070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1189
Musa acuminata
SE2330070
hAT
Hat1
chr6:2700759-2700976
GTTTATCT
TCAAGGTTCGC

Secondary structure and sequence

TSD TIR

5'

3'

GTTTATC   A    C  AAT        A         TT  ATCTGGGCTCGGTACCGGTACGGTACGGTGTACCGAGCGGTACACCTGAGTGTACCTGAGTACTACAG
       TCA GGTT GC   ACCGTACC TACCGGTAT  CG                                                                    
       ||| |||| ||   |||||||| |||||||||  ||                                                                    T
       GGT CCAG CG   CATGGCTC GGTATGGCG  GG                                                                    
TCTATTT   C    A  --G        -         --  CCATACCCGCCATGCATGGCCAGGCTGTCCAACAGCCATGCGCCTGGCTGACAATGGACAGGCCCTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330070

GTTTATCTCAAGGTTCGCAATACCGTACCATACCGGTATTTCGATCTGGGCTCGGTACCGGTACGGTACGGTGTACCGAGCGGTACACCTGAGTGTACCTGAGTACTACAGTACTCCCGGACAGGTAACAGTCGGTCCGCGTACCGACAACCTGTCGGACCGGTACGTACCGCCCATACCGGGCGGTATGGCTCGGTACGGCAGACCCTGGTTTATCT

Copy Cancel