Plant MITE

SE2330079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1198
Musa acuminata
SE2330079
hAT
Hat4
chr6:2940842-2941070
CTTCTCCA
CAAGGTCCGCCATACC

Secondary structure and sequence

TSD TIR

5'

3'

CTTCTCCA  AG   C   A    -----        -   G  -   CGACTCGGGCTCGGTACGGTACGGTACCGGTGTACTAGGCGGTACACTAGGGTGTACCGATACTGTAGCA
        CA  GTC GCC TACC     GTACCGTA CCG AG TTT                                                                      
        ||  ||| ||| ||||     |||||||| ||| || |||                                                                      G
        GT  CAG CGG ATGG     CATGGCCA CAT GG CCG                                                                      
ACCTCTTC  CA   A   C    CTTCA        G   -  C   CCATACATGGCCAGGCGGTTCATGAGCCATGCGTCTGGCGAGACATGGCGATGTCACGATGTGACATCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330079

CTTCTCCACAAGGTCCGCCATACCGTACCGTACCGGAGTTTCGACTCGGGCTCGGTACGGTACGGTACCGGTGTACTAGGCGGTACACTAGGGTGTACCGATACTGTAGCAGTACTACAGTGTAGCACTGTAGCGGTACAGAGCGGTCTGCGTACCGAGTACTTGGCGGACCGGTACATACCGCCCGGTACGACCGGTACACTTCGGTACGGCAGACACTGCTTCTCCA

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