Plant MITE

SE2330082

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1201
Musa acuminata
SE2330082
hAT
Hat1
chr4:23751586-23751842
GTTTTATG
G

Secondary structure and sequence

TSD TIR

5'

3'

         TTTA   AA -  TCGTA   -       -         TTTCGATCTGGGCTCGGTACCGGTACGGTACGGTGTACCAAGCGGTACATCCAGGTGTGTCGAGTACTGTAGCACTGCTACAGTGCTATA
       GT    TGC  G GT     ATA CCGTACC GTACCGGTA                                                                                          
       ||    |||  | ||     ||| ||||||| |||||||||                                                                                          T
       GG    TCC  A AC     GGC TGGCTTG CATGGCGGG                                                                                          
GTATTTT  ----   -C G  -----   A       A         CTATACCCGCCATGCATGGCCAGGCTATCCAACAGCCATGTGCCTGGCGGACAATGGCCAGGCTCACGTGACATAGTGACATCGTCACGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330082

GTTTTATGCAAGGTTCGTAATACCGTACCGTACCGGTATTTCGATCTGGGCTCGGTACCGGTACGGTACGGTGTACCAAGCGGTACATCCAGGTGTGTCGAGTACTGTAGCACTGCTACAGTGCTATATTGCACTGCTACAGTGATACAGTGCACTCGGACCGGTAACAGGCGGTCCGTGTACCGACAACCTATCGGACCGGTACGTACCGCCCATATCGGGCGGTACAGTTCGGTACGGCAGACCCTGGTTTTATG

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