Plant MITE

SE2330083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1202
Musa acuminata
SE2330083
hAT
Hat1
chr8:7564757-7564984
GATTTACC
CCAAGGTATGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

GATTTAC   A          --------  -  -    A      T   TCGAGGTTGGCTCGGTACGGTACGGTACCGGCATACCGAGCGGTATACCAAGGTTTACCGAGCTATTTCC
       CCA GGTATGCAAT        AC CG TACC TACCGG GTT                                                                      
       ||| ||||||||||        || || |||| |||||| |||                                                                       
       GGT CCATACGTTA        CA GG AGAT CACGCC CGC                                                                      
CCATTTA   A          AAGCTTAC  T  C    -      -   CATGCATGGCCAGGTTACCGTATGGCCATGCACCTGGCGGGCGATGGTCTACCTGTCACGATGTCATTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330083

GATTTACCCAAGGTATGCAATACCGTACCATACCGGTGTTTCGAGGTTGGCTCGGTACGGTACGGTACCGGCATACCGAGCGGTATACCAAGGTTTACCGAGCTATTTCCTCTTACTGTAGCACTGTCCATCTGGTAGCGGGCGGTCCACGTACCGGTATGCCATTGGACCGGTACGTACCGCCCGCACTAGACGGTACCATTCGAAATTGCATACCATGGATTTACC

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