Plant MITE

SE2330084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1203
Musa acuminata
SE2330084
hAT
Hat1
chr2:10878272-10878550
GTTATAAT
GTTATAATCATGGTATGCA

Secondary structure and sequence

TSD TIR

5'

3'

          T        -    -        A  GCCCGGTATGGGCGGTACGTACCGGTCCGATGGCATACCGGTACGCGGACCGCCCGGTACCGGACGGAACGTGCTATAGTGCTACAGTATTATACTGTAGCAATG
GTTATAATCA GGTATGCA GTAT CGAATAGT CC                                                                                                         
|||||||||| |||||||| |||| |||||||| ||                                                                                                          
TAATATTAGT CCATACGT ATGG ATGGCATG GC                                                                                                         
          T        T    C        -  CACAAAGCTCCAACCGAGCCATGCCATACCATGACCGTATGGCTCGCCATGTGGTCCCGCATGGCTTGTCAAAATATATAAAAGAAGAAATGACATCGTGACATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330084

GTTATAATCATGGTATGCAGTATCGAATAGTACCGCCCGGTATGGGCGGTACGTACCGGTCCGATGGCATACCGGTACGCGGACCGCCCGGTACCGGACGGAACGTGCTATAGTGCTACAGTATTATACTGTAGCAATGCTACAGTGCTACAGTAAAGAAGAAAATATATAAAACTGTTCGGTACGCCCTGGTGTACCGCTCGGTATGCCAGTACCATACCGTACCGAGCCAACCTCGAAACACCGGTACGGTACGGTATTGCATACCTTGATTATAAT

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