Plant MITE

SE2330088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1207
Musa acuminata
SE2330088
hAT
Hat1
chr8:19153515-19153750
GTTGAAAG
G

Secondary structure and sequence

TSD TIR

5'

3'

GTTGAAAGCAAG     CA          ---     --     TT   CCTGGGCTCGGTACCGGTACGGTACGGTATACCGAGCGGTACACCCAGGTGTACCGAGTACTGTAGCACTGCTACAGT
            GTTCG  ATACCGTATC   GTACC  GGTAT  CGA                                                                              
            |||||  ||||||||||   |||||  |||||  |||                                                                               
            AGTTG  GTCCCAGACG   TGGCT  GTATG  GCG                                                                              
         GAA     --          GCA     CG     --   GGTCATGCCTGCCATGCATGGCCAGGCTGTCCAACAGCCATGCGTCTGGCTGACAATGGCCAAACTCACGTGACATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330088

GTTGAAAGCAAGGTTCGCAATACCGTATCGTACCGGTATTTCGACCTGGGCTCGGTACCGGTACGGTACGGTATACCGAGCGGTACACCCAGGTGTACCGAGTACTGTAGCACTGCTACAGTGCTACAGTGCACTCAAACCGGTAACAGTCGGTCTGCGTACCGACAACCTGTCGGACCGGTACGTACCGTCCGTACTGGGCGGTATGGCTCGGTACGGCAGACCCTGGTTGAAAG

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