Plant MITE

SE2320091

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1210
Musa acuminata
SE2320091
Mutator
M1
chr6:3084033-3084334
TCAGATAAA
AGGGCTAATTACAGATTATCCTTTGTAATTAATTATCCTTAGCATATCGGTTCTTATACTTTTAAAAATTATATTAAGATCGCTATACTTATGAAAGTGAAATATTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TCAGATAA                    CTT        A             A            C        A       AA   CG                        T  CC    TACTCCAACAAAATCTTTTTTTTTAACC
        AGGGCTAATTACAGATTATC   TGTAATTA TTATCCTTAGCAT TCGGTTCTTATA TTTTAAAA TTATATT  GAT  CTATACTTATGAAAGTGAAATATT AG  TTGT                            
        ||||||||||||||||||||   |||||||| ||||||||||||| |||||||||||| |||||||| |||||||  |||  |||||||||||||||||||||||| ||  ||||                             
        TCTCGATTAATGTCTAATAG   ATATTAAT GATAGGAATTGTA GGCTAGGGATGT AAAGTTTT AATATAA  CTA  GATATGAATGTTTTCACTTTATAA TC  GGGA                            
AAATAGAC                    AGT        C             A            A        C       CC   AA                        T  TA    TATGTCCCAATATTTCCATTAAAGTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2320091

TCAGATAAAGGGCTAATTACAGATTATCCTTTGTAATTAATTATCCTTAGCATATCGGTTCTTATACTTTTAAAAATTATATTAAGATCGCTATACTTATGAAAGTGAAATATTTAGCCTTGTTACTCCAACAAAATCTTTTTTTTTAACCCTATGAAATTACCTTTATAACCCTGTATAGGGATCTTAATATTTCACTTTTGTAAGTATAGAAATCCCAATATAACTTTTGAAAATGTAGGGATCGGAATGTTAAGGATAGCTAATTATATGAGATAATCTGTAATTAGCTCTCAGATAAA

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