Plant MITE

SE2330094

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1213
Musa acuminata
SE2330094
hAT
Hat1
chr9:10820019-10820257
GTAAAGAA
CATGGTATGCAATTTC

Secondary structure and sequence

TSD TIR

5'

3'

GTAAAGAA  T          T  GAATA          GTACGGGCGGTACATACCGGTCCGACGGCATACCGGTACGCGGACCGCCCGCTACCGGACGGAACGTGCTACAGTAAGAGGAA
        CA GGTATGCAAT TC     GTACCGCCCG                                                                                   
        || |||||||||| ||     ||||||||||                                                                                    
        GT CCATACGTTA GG     TATGGTATGG                                                                                   
AAGAAATG  T          T  -----          CCACAAAGCTCCAACCGAGCCATACCATGTTATGACACATAGCGAGCCATGTGGTCCCGCATGGCTCACTAAAATTTATAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330094

GTAAAGAACATGGTATGCAATTTCGAATAGTACCGCCCGGTACGGGCGGTACATACCGGTCCGACGGCATACCGGTACGCGGACCGCCCGCTACCGGACGGAACGTGCTACAGTAAGAGGAAGAAATATTTAAAATCACTCGGTACGCCCTGGTGTACCGAGCGATACACAGTATTGTACCATACCGAGCCAACCTCGAAACACCGGTATGGTATGGTATTGCATACCTTGGTAAAGAA

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