SE2330102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1221
  • Musa acuminata
  • SE2330102
  • hAT
  • Hat1
  • chr11:21258468-21258716
  • GTTTCAAT
  • AATCATGGTATGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTC     T          TTCGAATAGTA   C        GGCGGTATGTACCGGTCCGACGGCATACCAGTACGTGGACCGCCCGCTACCGGACGGAACGTGCTACAGTGCTATAGCAAGAGG
     AATCA GGTATGCAAT           CTG CCGGTACG                                                                                    
     ||||| ||||||||||           ||| ||||||||                                                                                     
     TTGGT CCATACGTTA           TAT GGCATGGC                                                                                    
TAACT     T          ------TGACA   -        CACAAAGCTCCAACCGAGCCATGCCATAGCATGGTACATGGCGAGCCATCTGGTCCCGCATGGCTCACCAAAATTTATAAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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