Plant MITE

SE2330107

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1226
Musa acuminata
SE2330107
hAT
Hat4
chr11:4180999-4181277
GTCCTTAG
CAAGGTCTGCTGTACCGAAGCGTACCG

Secondary structure and sequence

TSD TIR

5'

3'

GTCCTTAG      C          A G       -----CCC      ---      ACATACTGGTCCGACAGGTTACCGGTACGCGGGCCGCCCGGTACCGCTACAGTGCTACAGTACTATACTGTAGCACTGCTGCAGT
        CAAGGT TGCTGTACCG A CGTACCG        GTACCG   GGCGGT                                                                                     
        |||||| |||||||||| | |||||||        ||||||   ||||||                                                                                     A
        GTTCCA GCGACATGGC T GCATGGC        TGGGCC   GCCATG                                                                                     
GATTCCTG      A          A G       CACAAAGC      CGA      CCATGCCATGGCCACATGGCCCGCCATGTAGTCCCGTATGGCTCGCCATACGGGACCACATGGCTTATTAAAAAATAATAAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330107

GTCCTTAGCAAGGTCTGCTGTACCGAAGCGTACCGCCCGTACCGGGCGGTACATACTGGTCCGACAGGTTACCGGTACGCGGGCCGCCCGGTACCGCTACAGTGCTACAGTACTATACTGTAGCACTGCTGCAGTATGAAAATAATAAAAAATTATTCGGTACACCAGGGCATACCGCTCGGTATGCCCTGATGTACCGCCCGGTACACCGGTACCGTACCGTACCGAGCCCGGGTCGAAACACCGGTACGGTACGGTACAGCGAACCTTGGTCCTTAG

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