Plant MITE

SE2510008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1238
Brachypodium distachyon
SE2510008
Tc1/Mariner
St1
Bd1:53151179-53151440
TA
TACTCCCTCCGTCCACAGATATGTGTACTTCTAGGTTTTGTCTCAGGTCAAA

Secondary structure and sequence

TSD TIR

5'

3'

                     T                     C        -GATAT   A             -AC      AC          ---TTAT       AATTAGTATCATTAGATCCGTTTT
TACTCCCTCCGTCCACAGATA GTGTACTTCTAGGTTTTGTCT AGGTCAAA      TAG GTTTGACTGATTT   TGAAAA  GTAGCAACAT       GATACTA                        
||||||||||||||||||||| ||||||||||||||||||||| ||||||||      ||| |||||||||||||   ||||||  ||||||||||       |||||||                         
ATGAGGGAGGCAGGTGTTTAT CACATGAAGATCCAAAATAGA TTCAGTTT      ATC CAAACTGGTTGAA   ACTTTT  CATCGTTGTG       TAGTTTA                        
                     T                     A        GAAAAT   -             ACA      CT          TACACCG       GCCATATAATACTTTGATGTAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510008

TACTCCCTCCGTCCACAGATATGTGTACTTCTAGGTTTTGTCTCAGGTCAAAGATATTAGAGTTTGACTGATTTACTGAAAAACGTAGCAACATTTATGATACTAAATTAGTATCATTAGATCCGTTTTGAAATGTAGTTTCATAATATACCGATTTGATGCCACATGTGTTGCTACTCTTTTCAACAAAGTTGGTCAAACCTATAAAAGTTTGACTTAAGATAAAACCTAGAAGTACACTTATTTGTGGACGGAGGGAGTA

Copy Cancel