Plant MITE

SE2510013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1243
Brachypodium distachyon
SE2510013
Tc1/Mariner
St3
Bd1:7950791-7951047
TA
TACTCCCTCCGTTCCTAAATATAAGAA

Secondary structure and sequence

TSD TIR

5'

3'

    C                      GTCCTA                  C                         CA      CAC   G         A      A   ----A       A  ATAT
TACT CCTCCGTTCCTAAATATAAGAA      GCTTTGTCCTAAGTCAAA TTCTTCGAGTTTGACCAAGTTTATA  AAAATC   TAA ATCTACAGT TCAAAT AGT     TAGTATG CA    
|||| ||||||||||||||||||||||      |||||||||||||||||| |||||||||||||||||||||||||  ||||||   ||| ||||||||| |||||| |||     ||||||| ||    A
ATGA GGAGGCAAGGATTTATATTCTT      TGAAATAGGATTCAGTTT AAGAAGTTCAAACTGGTTCAAATAT  TTTTAG   GTT TAGATGTTG GGTTTA TCA     ATTATAC GT    
    T                      --AAAC                  A                         CG      ATA   G         A      A   AAATA       G  AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510013

TACTCCCTCCGTTCCTAAATATAAGAAGTCCTAGCTTTGTCCTAAGTCAAACTTCTTCGAGTTTGACCAAGTTTATACAAAAATCCACTAAGATCTACAGTATCAAATAAGTATAGTATGACAATATATAAATGGCATATTAATAAAACTAATTTGGAGTTGTAGATGTTGATAGATTTTGCTATAAACTTGGTCAAACTTGAAGAAATTTGACTTAGGATAAAGTCAAATTCTTATATTTAGGAACGGAGGTAGTA

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