SE2550020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1250
  • Brachypodium distachyon
  • SE2550020
  • PIF/harbinger
  • To7
  • Bd1:41166992-41167417
  • TTA
  • AGAGCATCTCGAATGGCATCCCCCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      T   G     C      C   -GCTA   -C         ------------A    A   -   TGGACATTTTGTTCCCAAAATCATCTCTCAATGGCATCCCCTAAACAGGCAAAATGCCATATTTGTCCGGACACATTCCCCAAACTTGCCCCAAATTTGGGAGAGATTTGGGGTGTCTGGACATTGTCCGGTGCTCTCTTTTGTCCGC
  AGAGCA CTC AATGG ATCCCC AAA     TCC  AAATGTCCT             TTTG GGG ATA                                                                                                                                                    
  |||||| ||| ||||| |||||| |||     |||  |||||||||             |||| ||| |||                                                                                                                                                     
  TCTCGT GAG TTACC TAGGGG TTT     AGG  TTTACAGGA             ACCC CCT GTT                                                                                                                                                    
AT      T   G     T      A   AAAAC   AT         AAAAAACCAGTAA    -   C   CACCTGTACACAGGAGGAGTACAGGCGGGTGTAGTGGGTTGGTGTAGGGGTTTAAAGAGAAGGTTTAATTGAAAAGGAAGAGAAATAGGAAAGAGGACACGAAAAGTGAAAAAGAAGTGGAAAAGGGTAGAGAACAACACCCCGGTCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End