SE2550023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1253
  • Brachypodium distachyon
  • SE2550023
  • PIF/harbinger
  • To8
  • Bd4:35205090-35205356
  • TAA
  • AGGGCTCATTCAGTTTGCGGGAATTTTAGAGGATTTTCACAGGAATTCAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      C    A     C    A    AGA    TT   CA     TC    CTAA     -  T  TATGGGTAGCATTCGTTTCATAAGAATTGAGGTTTTAAATTCGTAAGGATTGGTCTCAAATTAAACTAA
  AGGGCT ATTC GTTTG GGGA TTTT   GGAT  TCA  GGAAT  AGAA    GGATG TT CC                                                                     
  |||||| |||| ||||| |||| ||||   ||||  |||  |||||  ||||    ||||| || ||                                                                     T
  TCCCGG TAAG CAAAC TCCT AAAA   CCTA  AGT  CCTTA  TCTT    ATTTT TA AC                                                                     
AA      A    C     A    -    ---    --   AC     -T    -TTC     A  -  TCTACAGTACGGGTGAAGTTAGGAAACCTTAAAATTTACTCCAGAGTGGATTACACATCTAGGAATTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End