SE2550025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1255
  • Brachypodium distachyon
  • SE2550025
  • PIF/harbinger
  • To9
  • Bd5:4794753-4794991
  • GAT
  • GGGGCTGTTTGGTTTGAGCCCAAAGTTGCCCTACCAAAGATTTGGTTAGCCAAACAATTGGTGATGGTTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
GAT   GC           AGC      -T    CTA    AGA        ---      CAA      ATG      -------   GCCCATGAGTTAGCCAAATTTGGCCAAAAATTTGAA
   GGG  TGTTTGGTTTG   CCAAAG  TGCC   CCAA   TTTGGTTA   GCCAAA   TTGGTG   GTTTTG       CTA                                    
   |||  |||||||||||   ||||||  ||||   ||||   ||||||||   ||||||   ||||||   ||||||       |||                                    C
   CCC  ACAAACCAAAC   GGTTTT  ATGG   GGTT   AAACCAGT   TGGTTT   AACCAC   CAAAAC       GGT                                    
TAG   AC           GAT      GT    TTC    AAA        AAC      -TA      AAA      TACCACT   TTATATACCGATCGGTTACAAAGTATCGGTTGAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End