SE2520026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1256
  • Brachypodium distachyon
  • SE2520026
  • Mutator
  • M6
  • Bd1:46971187-46971726
  • TTCAATGGG
  • TCAATGGGGAGTAAAATACACCGCTAGTCCATTAACTCGGCAAAAATGAACACTTTAGTCCCGCGAAATCAAAAAACGCACATTTAAACCCCTAAACTGGGACTACCGTGTCACTTTAGTCCAAAAACGGTTCGGCGAGGCTTAAACACGCCACGTGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
T   A                            T                            CGC   A  AA         A                  G    CC                                              C      -   ACATCGGCTTCGGCGACCCCTTCACCGGCGTCCTCGCGTCAAAATTGAGCGTTGTGGACTTGATAGCAACCTTAGGCGAGGCAGCGGCGGCAACGGCGTGGTTCTC
 TCA TGGGGAGTAAAATACACCGCTAGTCCAT AACTCGGCAAAAATGAACACTTTAGTCC   GAA TC  AAAACGCAC TTTAAACCCCTAAACTGG ACTA  GTGTCACTTTAGTCCAAAAACGGTTCGGCGAGGCTTAAACACGCCA GTGGCC GCC                                                                                                          
 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| ||  ||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||                                                                                                           
 GGT ACTTCTCATTTTATGTGGTGATCAGGTA TTGAGCCGTTTTTACTTGTGAAATCAGG   CTT AG  TTTTGCGTG GAATTTGGGGATTTGACC TGAT  CACGGTGAAATCAGGTTTTTGTCAGGCTGCTCCGAATTTGTGCGGT CACTGG GCC                                                                                                          
G   A                            T                            -TA   G  CC         C                  G    AA                                              A      C   CGACGATGATCTAAAAGAATCCTAAAAAAAAAAAACGTTTTAGTGGTACGGGCTCGGCGGGCACTCCCCGTTCCGCCGGCGCGGGTCTGTCCCTAGGACCCCGGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End