Plant MITE

SE2510027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1257
Brachypodium distachyon
SE2510027
Tc1/Mariner
St7
Bd1:73023463-73023703
TA
TACTCCCTCCATTTCACAAAGAATGGCGCCCACGCTTTTCGAGGT

Secondary structure and sequence

TSD TIR

5'

3'

                             C     T         CGAA        A         A    T  A  TA A    C         TT             AAG  TTTT
TACTCCCTCCATTTCACAAAGAATGGCGC CACGC TTTCGAGGT    CTTTGACC ATGATTAGA TAAT GT TG  G TTAT TGTTACAAA  TTATATCGTTGGA   GT    
||||||||||||||||||||||||||||| ||||| |||||||||    |||||||| ||||||||| |||| || ||  | |||| |||||||||  |||||||||||||   ||    G
ATGAGGGAGGTAAAGTGTTTCTTACCGTG GTGCG AAAGTTCTA    GAAACTGG TGTTAATCT ATTA TA AC  C AATA ACAATGTTT  AATATAGTAACCT   CA    
                             C     T         AAAC        C         G    C  A  TC G    C         TT             AAG  TAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510027

TACTCCCTCCATTTCACAAAGAATGGCGCCCACGCTTTTCGAGGTCGAACTTTGACCAATGATTAGAATAATTGTATGTAGATTATCTGTTACAAATTTTATATCGTTGGAAAGGTTTTTGAAATACGAATCCAATGATATAATTTTTGTAACACATAAGCCTCAAATCATTAGTCTAATTGTCGGTCAAAGCAAAATCTTGAAATGCGTGCGTGCCATTCTTTGTGAAATGGAGGGAGTA

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