SE2550043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1273
  • Brachypodium distachyon
  • SE2550043
  • PIF/harbinger
  • To14
  • Bd1:15496202-15496526
  • TAA
  • ACAGCTCGTTTGGCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A        GACTAGAA  G        ATTTTGAATTCTAGAAACTAACTTGTTTGGTTGGCACGGAATTGAATACATGAATTCAATTTGCAATTCCATGGAATCACAATACAACTAACCTCAATTCCTCTCTACAAGCCATCATT
  ACAGCTCGTTTGGCACCC TCATTTGG        TT TGGAATTC                                                                                                                       
  |||||||||||||||||| ||||||||        || ||||||||                                                                                                                       T
  TGTCGAGCAAACCGTGGG GACTAAAG        TA AAGTAAAC                                                                                                                       
AA                  -        --------  -        CAGGTTTACTTTACTTTAGATCAAAAACCATCCTAAAGTAAACCAATTTAAACTTAAGGCCTAAGTTTTTAGTACAAACAGATGGTATACCTAAACATCTCAATCTCTGTTAAGGTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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