SE2550052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1282
  • Brachypodium distachyon
  • SE2550052
  • PIF/harbinger
  • To17
  • Bd1:39983072-39983391
  • ATA
  • GGGCTCCTTTGATTCAAAGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA     C          A     -----TTTC        TTT    GATTT          ----  TTT  --     ----- TA   GTTGTTTGATTTGTAGGATTGAACCCCATGGGAAAGTTTCCTAAGGATTCCGTTGCACTACATTTCATAGGATTTTTTCC
   GGGCT CTTTGATTCA AGGAT         ATAGGAAT   GGAG     GAATCCTTAG    GA   TT  TTCCC     A  TGG                                                                                
   ||||| |||||||||| |||||         ||||||||   ||||     ||||||||||    ||   ||  |||||     |  |||                                                                                A
   CCCGG GAAACTAAGT TCCTA         TATCCTTA   CCTT     AGTATCCTAA    AC   AG  TGGGT     T  AGG                                                                                
ATA     A          G     TCCTTTTTA        --T    ----T          CGTT  ---  TA     AAGCT --   ACGTCCTAACACCAATCTGTTTACAAACAAACTAACTTGTGTCCTTTTTGTTTCCTTAAACTTTTCCTCCAACCTCACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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