SE2550053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1283
  • Brachypodium distachyon
  • SE2550053
  • PIF/harbinger
  • To18
  • Bd2:16724187-16724309
  • TCA
  • GGGCTCGTTCGTTTGTGGTTTCCCCGGTGGGGATCAGTCGGGATCAACGGGAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCA      -        GTG    --C      G               CAA     A   GTG
   GGGCTC GTTCGTTT   GTTT   CCCGGT GGGATCAGTCGGGAT   CGGGA TTT   
   |||||| ||||||||   ||||   |||||| |||||||||||||||   ||||| |||    
   TCCGGG CAAGCAAA   CAGG   GGGCCG CTCTAGTTGGCTCTA   GTTCT AAA   
 AC      A        --A    ATC      G               ATA     -   ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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