Plant MITE

SE2510054

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1284
Brachypodium distachyon
SE2510054
Tc1/Mariner
St9
Bd1:24171971-24172210
TA
TACTCCCTCCGTTTGGGTTTATAAGGCTCG

Secondary structure and sequence

TSD TIR

5'

3'

                  TTA         TATT   A       CAC     AAC   C    ATTC  ---  - ATA   AGTATATGTATATAAAAGTTATACAATTAGAAAGAGTTTTTC
TACTCCCTCCGTTTGGGT   TAAGGCTCG    GAA TTTGTGC   ACTTT   CAA AATT    AA   AT T   TTT                                          
||||||||||||||||||   |||||||||    ||| |||||||   |||||   ||| ||||    ||   || |   |||                                          A
ATGAGGGAGGCAAACCCA   ATTCTGGGT    CTT AAATACG   TGAAA   GTT TTAA    CG   CG T   TAT                                          
                  TAC         GCGC   A       TTT     CTA   T    ----  TAA  A ---   ACTATAATAACGCCGTGTTTTCTATATAACAACCTAAGCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510054

TACTCCCTCCGTTTGGGTTTATAAGGCTCGTATTGAAATTTGTGCCACACTTTAACCAACAATTATTCAAATTATATTTAGTATATGTATATAAAAGTTATACAATTAGAAAGAGTTTTTCAATACGAATCCAACAATATATCTTTTGTGCCGCAATAATATCATATTAGCAATGCAATTTTTGATCAAAGTTTTGCATAAAATTCCGCGTGGGTCTTACATACCCAAACGGAGGGAGTA

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