Plant MITE

SE2510059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1289
Brachypodium distachyon
SE2510059
Tc1/Mariner
St7
Bd1:45877608-45877848
TA
TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

                          CA G     A    A  ATTTT            A           GACT  -   CTTA       C   AA             TTC  ATTT
TACTCCCTCCATTTCACAAAGAATGG  C CACGC TTTT AG     GCTTTGACCAAC ATTAGACTAAT    TG AGG    TGTGTTA AAA  TTATATCATTGGA   GT    
||||||||||||||||||||||||||  | ||||| |||| ||     |||||||||||| |||||||||||    || |||    ||||||| |||  |||||||||||||   ||    C
ATGAGGGAGGTAAAGTGTTTCTTACC  G GTGCG AAAG TC     TGAAACTGGTTG TAATCTGGTTA    AC TCT    ATACAAT TTT  AATATAGTAACCT   CA    
                          AC G     A    C  CAGCT            C           ACAT  A   -AAG       C   AA             TTC  AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510059

TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTTAAGATTTTGCTTTGACCAACAATTAGACTAATGACTTGAGGCTTATGTGTTACAAAAATTATATCATTGGATTCGTATTTCAAAAACCTTTCCAATGATATAAAATTTCTAACATAGAATCTACATACAATTGGTCTAATCGTTGGTCAAAGTTCGACCTCGAAAAGCGTGGGCACCATTCTTTGTGAAATGGAGGGAGTA

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