Plant MITE

SE2550064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1294
Brachypodium distachyon
SE2550064
PIF/harbinger
To13
Bd1:13500499-13500742
TTA
AGGGCATCTCCAACAGTGATTGTTATTA

Secondary structure and sequence

TSD TIR

5'

3'

TT         C       GAT        ATTCTCTTCTCTCTCTT   -   -  TATTTTTTATTTTTATTTTGTTTTC  TCTTGATGGATCCACATGTCATCTTCTTCTTTTTCTTGGTATCCGTGTAGAGGCTGTTACT
  AGGGCATCT CAACAGT   TGTTATTA                 CTT GAG TA                         TT                                                             
  ||||||||| |||||||   ||||||||                 ||| ||| ||                         ||                                                             T
  TCCCGTAGA GTTGTTA   ACAATAAT                 GTG CCA GG                         TT                                                             
AT         A       ---        -----------------   C   T  -------------------------  CTTTATGATCTGGTTACTCTTGTTCTGAACTTATTTTATTTATCCATCACCAATGAACTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550064

TTAGGGCATCTCCAACAGTGATTGTTATTAATTCTCTTCTCTCTCTTCTTGAGTATATTTTTTATTTTTATTTTGTTTTCTTTCTTGATGGATCCACATGTCATCTTCTTCTTTTTCTTGGTATCCGTGTAGAGGCTGTTACTTCTTCAAGTAACCACTACCTATTTATTTTATTCAAGTCTTGTTCTCATTGGTCTAGTATTTCTTGGTACCCGTGTAATAACAATTGTTGAAGATGCCCTTA

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