SE2530065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1295
  • Brachypodium distachyon
  • SE2530065
  • hAT
  • Hat4
  • Bd3:41241384-41241830
  • ACACTTGA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
ACACTTGACAG    GTATATTAGCAAGGGCAGAATGGGCGACCAAACAGGGCCGCTAACTGTTTGGGGCCCCCAAAATTTAGTTAAGCATATGTATTAATTATGTATTAATTAGGTGAAGATAGAATCGTATAGCCCACCAAGCACATGCATCCCTTTCAAGCTCACGACTAAAGGAAACTAACGCATATGCTCCCTGATCGCTCTTCCTTTCCCTTCCCTAAT
           GCCC                                                                                                                                                                                                                  
           ||||                                                                                                                                                                                                                   
           GTCC                                                                                                                                                                                                                  
   AGTTCACA    CGGCAGAGATCTTAAACCTCCGGGGACACGGTTTGTATTTTACTCTGGGGTACAGAACCTTTTAGGATTCATATCTTCACCTTAATCCTTTTTTTGTGACCACTTGATCTCATCTCTAACCTCAGGCGATTAACTAAAAGCACGACCCCCCTCAACGCATCCGGTTACACGCACTTCTTTAGTCTAATCTGGTCTAATTAAATCGTCCGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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