Plant MITE

SE2550067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1297
Brachypodium distachyon
SE2550067
PIF/harbinger
To3
Bd1:11696249-11696473
ATT
TGGGCCAGTTCTTTTCGGCTTTCTGGACTGGCTTCTCTGAGAAGCTGTCCTCTCCTAGCTTTTTGGAAAAGCCGCCACCTAAATTTGATTAGGCTACCAAACTAGTTTGGCCTAAACTACTTTGAAAGTCTAGCTAAATTTGTGACGCGGCTTCTCCAGGAAGCTAGGTGAGGCCAGCTTCTAGGAGAAGCCGGTCCAAGAAGCCAAAAAGAACGCACCCA

Secondary structure and sequence

TSD TIR

5'

3'

AT    CCA        C      C               G        T    T              A       --   CT       A       AC    C       G
  TGGG   GTTCTTTT GGCTTT TGGACTGGCTTCTCT AGAAGCTG CCTC CCTAGCTTTTTGGA AAGCCGC  CAC  AAATTTG TTAGGCT  CAAA TAGTTTG 
  ||||   |||||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||| |||||||  |||  ||||||| |||||||  |||| ||||||| C
  ACCC   CAAGAAAA CCGAAG ACCTGGCCGAAGAGG TCTTCGAC GGAG GGATCGAAGGACCT TTCGGCG  GTG  TTTAAAT GATCTGA  GTTT ATCAAAT 
TT    ACG        A      A               A        C    T              C       CA   --       C       AA    C       C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550067

ATTGGGCCAGTTCTTTTCGGCTTTCTGGACTGGCTTCTCTGAGAAGCTGTCCTCTCCTAGCTTTTTGGAAAAGCCGCCACCTAAATTTGATTAGGCTACCAAACTAGTTTGGCCTAAACTACTTTGAAAGTCTAGCTAAATTTGTGACGCGGCTTCTCCAGGAAGCTAGGTGAGGCCAGCTTCTAGGAGAAGCCGGTCCAAGAAGCCAAAAAGAACGCACCCATT

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