SE2510072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1302
  • Brachypodium distachyon
  • SE2510072
  • Tc1/Mariner
  • St8
  • Bd3:33242723-33242959
  • TA
  • TACTCCCTCCGTTCCCAACTAATTGGCGCCGGCCATTTTGCAAAAAGAAACCTATTAATTTACGAAATCAAGCTGCAGTATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C   C C  C             CC       AAA         --A   A  TA         G       A   --ATC     T -     TGGACTGCACGTTTATTTT
TACTCCCTC GTT C AA TAATTGGCGCCGG  ATTTTGC   AAGAAACCT   TTA TT  CGAAATCAA CTGCAGT TAT     TTCAA T GAACG                   
||||||||| ||| | || |||||||||||||  |||||||   |||||||||   ||| ||  ||||||||| ||||||| |||     ||||| | |||||                   G
ATGAGGGAG CAA G TT ATTAACCGCGGCC  TAAAGCG   TTTTTTGGG   GAT AA  GCTTTGGTT GACGTCA GTG     TGGTC T GAAAA                   
         A   C A  A             TT       --G         AAC   A  GG         G       G   CAAGA     - T     CGTTTTTTTGGATCAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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