Plant MITE

SE2550076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1306
Brachypodium distachyon
SE2550076
PIF/harbinger
To21
Bd3:22268936-22269214
TAA
AGGCTGGTCATAGTGCAAGTAACTTGGATAGTAACATAGATGTCAACTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA        C      -CA           -         --AG    CA     -A     TGA      GGCATGTCAATAAATGAAGAAAGAGAAAAATGTGGTAACTAGATATGTTATCATAACATCACACAAATTAAG
  AGGCTGGT ATAGTG   AGTAACTTGGA TAGTAACAT    ATGT  ACTAG  CATTT   TGACAT                                                                        
  |||||||| ||||||   ||||||||||| |||||||||    ||||  |||||  |||||   ||||||                                                                         
  TCCGACCA TATTAC   TCATTGAATCT ATCATTGTA    TACA  TGATC  ATTCA   ATGATG                                                                        
AA        A      CCC           T         CTAA    -A     AG     ---      GAGGCATCACCCATCATTGAATATACACCACAATATATAACATAGTAAATAATCGAACATCTGAGTAGAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550076

TAAGGCTGGTCATAGTGCAAGTAACTTGGATAGTAACATAGATGTCAACTAGACATTTTGATGACATGGCATGTCAATAAATGAAGAAAGAGAAAAATGTGGTAACTAGATATGTTATCATAACATCACACAAATTAAGACAAGATGAGTCTACAAGCTAATAAATGATACAATATATAACACCACATATAAGTTACTACCCACTACGGAGGTAGTAACTTAGACTAGTAACATAATCATGTTACTATTCTAAGTTACTCCCCATTATAACCAGCCTAA

Copy Cancel