SE2550077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1307
  • Brachypodium distachyon
  • SE2550077
  • PIF/harbinger
  • To3
  • Bd3:59201765-59201989
  • ATT
  • TGGGCCAGTTCTTTTCGGCTTCCTGGACCGGCTTCTCTGAGAAGCTGCTCTCACCCAGCTTCCTGGAGAAGCCGCCACCTAAATTTGATTAGGCTATCAAACTAGTTTGGTCTAAACTACTTTGAAAACCTAGCTAAATCTGAGATGTGGCTTCTCCAGGAAGCTAGGTGAGTGCAGCTTCTAGGAGAAGCCGGTCCTAGAAGCCGAAAAGAACGCACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AT    CCA               CT              G         T      C                   CA C  A     A     CTA     C       G
  TGGG   GTTCTTTTCGGCTTC  GGACCGGCTTCTCT AGAAGCTGC CTCACC AGCTTCCTGGAGAAGCCGC  C TA ATTTG TTAGG   TCAAA TAGTTTG 
  ||||   |||||||||||||||  |||||||||||||| ||||||||| |||||| |||||||||||||||||||  | || ||||| |||||   ||||| ||||||| T
  ACCC   CAAGAAAAGCCGAAG  CCTGGCCGAAGAGG TCTTCGACG GAGTGG TCGAAGGACCTCTTCGGTG  G GT TAAAT GATCC   AGTTT ATCAAAT 
TT    ACG               AT              A         T      A                   TA A  C     C     AAA     C       C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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