SE2510082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1312
  • Brachypodium distachyon
  • SE2510082
  • Tc1/Mariner
  • St9
  • Bd3:19056852-19057091
  • TA
  • TACTACCTCCATCCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     A     TTTTATA       -   TG         C      T    A  C       CAAATAAC   TAAGATA   -         TT   C       AAGA  TTTT
TACT CCTCC TCCGG       AGGGCTC TAT  GGTTTTGTG TAAATT TGAC AA AATTATA        ATG       TGT ATATAAAAG  GTA CATTAGA    GT    
|||| ||||| |||||       ||||||| |||  ||||||||| |||||| |||| || |||||||        |||       ||| |||||||||  ||| |||||||    ||     
ATGA GGAGG AGGCC       TTCCGGG GTA  CTAAAATAC GTTTGA ACTG TT TTAATGT        TAC       ACA TGTATTTTC  TAT GTAATCT    CA    
    G     C     -TATACA       C   TA         C      T    G  T       AATCAATA   TCAAATA   C         TC   A       -AAG  TAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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