Plant MITE

SE2550084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1314
Brachypodium distachyon
SE2550084
PIF/harbinger
To14
Bd5:12949964-12950286
TTA
ACAGCTCGTTTGGCACCCATCA

Secondary structure and sequence

TSD TIR

5'

3'

TT               CCC       -  GCA       GTAGAATTTAT   GAATTCCAAAAAACAACTTGTTTGGTTGGCACAGAATTAGCCACGGGAATTCAATCTCAAATTACATGGAATCACATTATAACTAGCCTTAATTCCTATCTAAAAGCCATCATTTC
  ACAGCTCGTTTGGCA   ATCATTT GA   TAGAATT           TTT                                                                                                                    
  |||||||||||||||   ||||||| ||   |||||||           |||                                                                                                                    T
  TGTCGAGCAAACCGT   TAGTTCT AA   GTAAAGT           AAA                                                                                                                    
AT               ---       T  ---       -----------   CTAGTTTTACTTTACTTTAGGTTAAAAACTATCTTAAAATAAACCAACTTAAACTTAAGGCCCAACTTTTTAGTACAAACAGATGGTGTACCTTAACTTTTCACTCTCTGTTGGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550084

TTACAGCTCGTTTGGCACCCATCATTTGAGCATAGAATTGTAGAATTTATTTTGAATTCCAAAAAACAACTTGTTTGGTTGGCACAGAATTAGCCACGGGAATTCAATCTCAAATTACATGGAATCACATTATAACTAGCCTTAATTCCTATCTAAAAGCCATCATTTCTCTGGTTGTCTCTCACTTTTCAATTCCATGTGGTAGACAAACATGATTTTTCAACCCGGAATTCAAATTCAACCAAATAAAATTCTATCAAAAATTGGATTTCATTTCATTTTGATCAAATGAAATGAATTCTTGATTGCCAAACGAGCTGTTA

Copy Cancel