SE2510093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1323
  • Brachypodium distachyon
  • SE2510093
  • Tc1/Mariner
  • St3
  • Bd2:47026245-47026502
  • TA
  • TACTACCTCCATTCCTAAATATAAGAAGTTCTAGCTTTGTCCTAAGTCAAACTTTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     A  C      A              T  G                   CAATG                   ---         ------   TACTATCAAATAAATATATTGCAAAAATAT
TACT CCTCC TT CTAAAT TAAGAAGTTCTAGC TT TCCTAAGTCAAACTTTTTA     TGATCAAGTTTATAGAAAA   TATCAACAT      AAA                              
|||| ||||| || |||||| |||||||||||||| || |||||||||||||||||||     |||||||||||||||||||   |||||||||      |||                              A
ATGA GGAGG AA GATTTA ATTCTTCAAGATCG AA AGGATTCAGTTTGAAAAAT     ACTAGTTTAAATATTTTTT   ATGGTTGTA      GAG                              
    G     C  A      C              T  G                   TTGAA                   TAG         GATACC   ATTTACTCAAAATAATTTAGGTAGTACTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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