Plant MITE

SE2530094

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1324
Brachypodium distachyon
SE2530094
hAT
Hat8
Bd3:5977460-5978010
AACAGAAC
TCAAGATGGCAATGGGCCTCGAAACCCG

Secondary structure and sequence

TSD TIR

5'

3'

AACAGAAC  AA            CCT         AAA  A  -------     TTTT    CAT      AC     TGGGTCAAATTCAATCCCTGCGGGTTTGCTCATGAGTCAAAAGGGTTTCACGGGTTCAAACCCGGTCCCGCACTCCCCGAACCCCGTACCCATGAAACCCATGAAAACACAATATGGCCCATAAAAATGGCCCGATACAGCTCATATTTCTATCCCAAAAGGTGTTGTTACATGTGAGAACTAGTATATGATATTGTTATATGT
        TC  GATGGCAATGGG   CGAAACCCG   AC CG       TGGGT    ACCC   TAGGGG  GAGTT                                                                                                                                                                                                            
        ||  ||||||||||||   |||||||||   || ||       |||||    ||||   ||||||  |||||                                                                                                                                                                                                            G
        AG  CTACCGTTGCCC   GCTTTGGGC   CC CA       CGGGT    TTGG   CAGGGG  TGCTG                                                                                                                                                                                                            
CAAGACAA  GC            -CT         -GG  -  TCACCGA     ----    --A      --     GAAGTAGTAGGTAGGGGCAGGGGCAGGGGCCAGCGCCCAAAGTCAAAAGAGGATCGGGGCAGGGGTAGTCCAAAAAAGGAGCAGTCCCTTGGGTTTGGTGGTCGTAAAGTCGTGGTTCGGTTTCAACGTCGTCGTTGAACTTACTTTTTGTTAGGCAAAGTCGTGGTTCTATTCTGTTTTGTAATATTAAATCCGTGGTAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530094

AACAGAACTCAAGATGGCAATGGGCCTCGAAACCCGAAAACACGTGGGTTTTTACCCCATTAGGGGACGAGTTTGGGTCAAATTCAATCCCTGCGGGTTTGCTCATGAGTCAAAAGGGTTTCACGGGTTCAAACCCGGTCCCGCACTCCCCGAACCCCGTACCCATGAAACCCATGAAAACACAATATGGCCCATAAAAATGGCCCGATACAGCTCATATTTCTATCCCAAAAGGTGTTGTTACATGTGAGAACTAGTATATGATATTGTTATATGTGTGAAATGGTGCCTAAATTATAATGTTTTGTCTTATCTTGGTGCTGAAACGGATTGTTTTTCATTCAAGTTGCTGCTGCAACTTTGGCTTGGTGCTGAAATGCTGGTGGTTTGGGTTCCCTGACGAGGAAAAAACCTGATGGGGACGGGGCTAGGAGAAAACTGAAACCCGCGACCGGGGACGGGGACGGGGATGGATGATGAAGGTCGTGGGGACAGGTTTGGGCAGCCACTACCCGGCGGGTTTCGTCCCCGTTGCCATCCGGAAACAGAAC

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