SE2530095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1325
  • Brachypodium distachyon
  • SE2530095
  • hAT
  • Hat2
  • Bd2:17727438-17727598
  • GGTCCAGC
  • GGTCCAGCTAGGGTTGCAAGTGGGCTCCCACTTAAGTCCCACTTCTATTTCATTTGGTATTTTCTAGTTCAAAATCTTGGCTCAAAATTTGAACTACAAATTGAAAAATTGAACTAGAAGTGGGACTTAAGTGGGAGCCCACTTGCAACCCTAGGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
     T  AGC                                       T    -   GG  T   C         ATC   G
   GG CC   TAGGGTTGCAAGTGGGCTCCCACTTAAGTCCCACTTCTA TTCA TTT  TA TTT TAGTTCAAA   TTG 
   || ||   ||||||||||||||||||||||||||||||||||||||| |||| |||  || ||| |||||||||   ||| C
   CC GG   ATCCCAACGTTCACCCGAGGGTGAATTCAGGGTGAAGAT AAGT AAA  GT AAA ATCAAGTTT   AAC 
CGA  T  ---                                       C    T   AA  T   C         -AA   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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