Plant MITE

SE2550097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1327
Brachypodium distachyon
SE2550097
PIF/harbinger
To20
Bd4:6395826-6396162
TAA
TAAGGGCGTG

Secondary structure and sequence

TSD TIR

5'

3'

          C   AT  AGTAACG ---  G    TTCTTAAGGCTGCCACATAGGATAATTGCTGATGTGGAGGAGAGAGGGGTGAAGAAAGGCATGGGTCTTCTCTTAGCTAAGAGATGTTCTCTTCACAAGAAGGATAAGGCAAAGAAAAGGCAAATTCCCCATTGTAGT
TAAGGGCGTG ACC  TG       T   CA CCTT                                                                                                                                          
|||||||||| |||  ||       |   || ||||                                                                                                                                          A
ATTCCCGTAC TGT  AC       C   TA TTCT                                                                                                                                          
          A   -T  ------- AAC  -    GGCGAGAATACACAAGGTACAGTAAATCTATTCTGTTGTTTTATACAACATGTTATCCAGTAGATAATCACAGTATAGAATGTTAATTACGGATCTACTTATTTTCATTTATTTATTTACGATTCTTTTCCACTTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550097

TAAGGGCGTGCACCATTGAGTAACGTCAGCCTTTTCTTAAGGCTGCCACATAGGATAATTGCTGATGTGGAGGAGAGAGGGGTGAAGAAAGGCATGGGTCTTCTCTTAGCTAAGAGATGTTCTCTTCACAAGAAGGATAAGGCAAAGAAAAGGCAAATTCCCCATTGTAGTACATTTCACCTTTTCTTAGCATTTATTTATTTACTTTTATTCATCTAGGCATTAATTGTAAGATATGACACTAATAGATGACCTATTGTACAACATATTTTGTTGTCTTATCTAAATGACATGGAACACATAAGAGCGGTCTTATCAACCATTGTACATGCCCTTA

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