SE2550102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1332
  • Brachypodium distachyon
  • SE2550102
  • PIF/harbinger
  • To16
  • Bd1:18866097-18866371
  • TAA
  • AGGCCTTTTTTGGTGCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       T       C   -----------AG   ---      T TTTT --     T - T    A TCCAAATTGAAAACACTAGAAACCCCAAATGGTTGTTTGGTAGGAAGGGTTAGAGGGGATTATCCCTAGTTTCCCCCC
  AGGCCTT TTTGGTG TAG             TTT   TTGGGG G    C  TAGGG A T ATCC C                                                                              
  ||||||| ||||||| |||             |||   |||||| |    |  ||||| | | |||| |                                                                              A
  TCCGGAA AAACCAC ATC             ATG   ACAAAA C    C  AAACT C C AAAC C                                                                              
AA       C       A   ACATAAAAAATCA   ATC      - ---- AT     - C C    - ACAAGTGGGTTTTGAGAGTTTTTGGGTTTTGTAACCATACTCTTCAAAAATTAAACCATGTTTTTACCTCAAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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