Plant MITE

SE2510105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1335
Brachypodium distachyon
SE2510105
Tc1/Mariner
St1
Bd1:27687608-27687866
TA
TACTCCCTCCGTCCACAAATAAGTGTA

Secondary structure and sequence

TSD TIR

5'

3'

        C    CAC           CATCTAGT      C         AAAA      -         CTA         T          CA      A      C    TATTATAAAAGTACATT
TACTCCCT CGTC   AAATAAGTGTA        TTTGTC TAAGTCAAA    ATTAGG TTTGACCAA   TGTTGAAAA AGTAGCAACA  TATGAC TCAAAT TGTA                 
|||||||| ||||   |||||||||||        |||||| |||||||||    |||||| |||||||||   ||||||||| ||||||||||  |||||| |||||| ||||                  
ATGAGGGA GCAG   TTTATTTACAT        AAACAG ATTCAGTTT    TAATTT AAACTGGTT   ATAACTTTT TTATCGTTGT  ATACTG AGTTTA TTGT                 
        A    ATA           AAAAACCC      T         -CTG      T         AAA         -          AA      A      A    AACAATCTAGGCAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510105

TACTCCCTCCGTCCACAAATAAGTGTACATCTAGTTTTGTCCTAAGTCAAAAAAAATTAGGTTTGACCAACTATGTTGAAAATAGTAGCAACACATATGACATCAAATCTGTATATTATAAAAGTACATTTCAAACGGATCTAACAATGTTAATTTGAAGTCATAAATGTTGCTATTTTTTCAATAAAATTGGTCAAATTTTAATGTCTTTGACTTATGACAAACCCAAAAATACATTTATTTATAGACGAAGGGAGTA

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