Plant MITE

SE2530106

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1336
Brachypodium distachyon
SE2530106
hAT
Hat13
Bd3:49159018-49159211
TGTAAGGC
GTAAGGCCATAGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

T  AAG  -  TA      GA      --   GGCAAGGGGGGCCACGGCCTGGGGCTTGGGCTTTTTTTCCTTTGGGAAATTGTGGTAATTTGATGTTT
 GT   GC CA  GGCGGA  CAAGCC  CCA                                                                    
 ||   || ||  ||||||  ||||||  |||                                                                     
 CG   TG GT  CCGCCT  CGGCCC  GAT                                                                    
   GAA  T  CG      --      TT   TAAATCTGGTGCCGATAATATCACATACACCGATTCGTTATCATTAATTTCTCCTGTTTGGGGTGCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530106

TGTAAGGCCATAGGCGGAGACAAGCCCCAGGCAAGGGGGGCCACGGCCTGGGGCTTGGGCTTTTTTTCCTTTGGGAAATTGTGGTAATTTGATGTTTGGCGTGGGGTTTGTCCTCTTTAATTACTATTGCTTAGCCACATACACTATAATAGCCGTGGTCTAAATTAGTTCCCGGCTCCGCCGCTGTGTAAGGC

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