SE2510110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1340
  • Brachypodium distachyon
  • SE2510110
  • Tc1/Mariner
  • St9
  • Bd1:24171971-24172210
  • TA
  • TACTCCCTCCGTTTGGGTATGTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                  A      ACCCACGCG   T   A   AAA          AAAAT   AT   TAATATGATATTATTGCGGCACAAAAGATATATTGTTGGATTCGTATTGAAA
TACTCCCTCCGTTTGGGT TGTAAG         GAA TTT TGC   ACTTTGATCA     TGC  TGC                                                    
|||||||||||||||||| ||||||         ||| ||| |||   ||||||||||     |||  |||                                                    A
ATGAGGGAGGCAAACCCA ATATTC         CTT AAA ACG   TGAAATTGGT     TGT  TAA                                                    
                  A      CGAGCATAA   T   C   GTG          -----   --   TAAGTTTAATATAAATCATATACATATATTTTCAATATGTTAATCTTTCTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3