SE2520112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1342
  • Brachypodium distachyon
  • SE2520112
  • Mutator
  • M16
  • Bd2:55855905-55856320
  • TATTTGTTA
  • TAGGCGAAGTATCCGGTGAAAACCACCTCTACGGTGCAAACTGTGAAAACTTCATCGAAAAGACTTCAGAAAATTCTCAAAAAAATCACATATGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTGT                        A   CTA              A   C     CGA       -------------            CAA      CA        AGAAAA             T  G             TTC    C    TTT       T  CAGCG     -AAC    TC    -         G  TTTTA
       TAGGCGAAGTATCCGGTGAAAACC CCT   CGGTGCAAACTGTG AAA TTCAT   AAAGACT             TCAGAAAATTCT   AAAAAT  CATATGTT      GTGATGTTTTATA AT TGTAAAATTTCAA   CAAA TCAA   CGTTTGG AG     AAAAA    AAAT  TGCA TGAATAGTG TC     
       |||||||||||||||||||||||| |||   |||||||||||||| ||| |||||   |||||||             ||||||||||||   ||||||  ||||||||      ||||||||||||| || |||||||||||||   |||| ||||   ||||||| ||     |||||    ||||  |||| ||||||||| ||     G
       ATCCGCTTCATAGGCCACTTTTGG GGG   GCCACGTTTGGCAT TTT AAGTA   TTTTTGG             AGTTTTTTAAGA   TTTTTA  GTATACAA      CGCTACAAGATGT TG ACGTTTTAAAGTT   GTTT AGTT   GTAAACT TC     TTTTT    TTTA  ATGT ACTTATCAC AG     
ATTGTTT                        -   TAA              G   T     ---       TACAAATTTTCAA            -TG      TG        CCCTCG             T  G             CAA    T    TTC       T  CTTAA     CTCT    --    T         -  TTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End